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xiVIEW is a web-based visualisation tool for the analysis of cross-linking / mass spectrometry results, it is independent of the search software used. It provides multiple, linked views of the data, including:
- 2D network (xiNET or circular)
- the supporting annotated spectra using xiSPEC.
- 3D structure view using NGL.
NOTE: Funding for Rappsilber Laboratory at Edinburgh University ended in 2024. Since then, this server has been hosted by The University of Edinburgh out of good will. Thank you University of Edinburgh!
The recommended input file format for identifications is version 1.2.0 of mzIdentML. Some CSV formats are also supported.
If your mzIdentML 1.2.0 files work with xiVIEW and spectra are displayed then the files meet the criteria for inclusion in the PRIDE crosslinking archive.
The video tutorials give an overview of xiVIEW's many features.
When using xiVIEW please cite:
Combe, Colin W., Martin Graham, Lars Kolbowski, Lutz Fischer, and Juri Rappsilber. 2024. “xiVIEW: Visualisation of Crosslinking Mass Spectrometry Data.” Journal of Molecular Biology, no. 168656 (June), 168656. https://doi.org/10.1016/j.jmb.2024.168656.
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